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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14482218_14486293_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14482218 - 14486293
Intron Length:
4076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TAATGCTTAATT
Flanking Amino Acid:
EDETQKELEALRNQGQVRGT
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.4
41.2
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
84.8
0.78
0.7
80
25.5
Minor 5ss
35.1
-1.7
3.2
50.8
45
Minor BPS
69.2
0.68
1.7
82.12
39.3

Associated Gene:

Gene:
PITPNB
Ensembl Gene ID:
ENSAPLG00000008798
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009192
14482167 - 14509354
27188