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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14488764_14491113_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14488764 - 14491113
Intron Length:
2350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAGA
5'SS Class:
strong_major
3'SS Sequence:
TATCTGTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATCTGTAAAC
Flanking Amino Acid:
KRGPLGPNWKKELATDEECP
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.6
37
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
67.2
0.39
1.1
62.6
42
Minor 5ss
32.9
-1.9
2.9
41.2
44.6
Minor BPS
56.5
0.18
2.1
72.33
38.7

Associated Gene:

Gene:
PITPNB
Ensembl Gene ID:
ENSAPLG00000008798
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009192
14482167 - 14509354
27188