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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14491192_14502595_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14491192 - 14502595
Intron Length:
11404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTACATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTTTCTGACT
Flanking Amino Acid:
IADRTQVEPGDYKADEDPAL
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.1
0.68
0.8
74.4
34.8
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
66.3
0.59
1.6
87.21
31.8

Associated Gene:

Gene:
PITPNB
Ensembl Gene ID:
ENSAPLG00000008798
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009192
14482167 - 14509354
27188