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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14502680_14504837_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14502680 - 14504837
Intron Length:
2158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TTCTCCGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTCAT
U12 Branch Point Sequence:
AAATCGTTCATT
Flanking Amino Acid:
HKPDLGTLENVHNLDPNTWK
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.3
65.8
42.7
Major BPS
72.4
0.56
1.2
75
39.9
Major PPT
82.1
0.72
0.8
76.5
32
Minor 5ss
35.5
-1.6
2.8
39.4
39.7
Minor BPS
47.5
-0.1
2.4
68.29
42.7

Associated Gene:

Gene:
PITPNB
Ensembl Gene ID:
ENSAPLG00000008798
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009192
14482167 - 14509354
27188