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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14505955_14507587_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14505955 - 14507587
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
QYTHKIYHLKSKVPGFVRMI
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.4
0.84
0.7
83.5
31.6
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
PITPNB
Ensembl Gene ID:
ENSAPLG00000008798
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009192
14482167 - 14509354
27188