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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14521373_14522038_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14521373 - 14522038
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GCATTGTTACTT
Flanking Amino Acid:
NRAVKNVVGMLHQVLVQLQA
Intron Amino Acid Position:
1809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
84.7
0.78
0.8
82.1
34.6
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
45.1
-0.2
2.2
60.31
43.9

Associated Gene:

Gene:
TTC28
Ensembl Gene ID:
ENSAPLG00000009407
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009814
14516352 - 14661973
145622