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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14524928_14525985_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14524928 - 14525985
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCATTTTTAAAA
Flanking Amino Acid:
RDALRVLLHLVEKSLQRIQN
Intron Amino Acid Position:
1698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.9
0.67
0.8
73.8
30.6
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
64.8
0.46
1.3
68.66
37.8

Associated Gene:

Gene:
TTC28
Ensembl Gene ID:
ENSAPLG00000009407
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043953
14516005 - 14661973
145969
ENSAPLT00000030822
14516005 - 14661922
145918
ENSAPLT00000009814
14516352 - 14661973
145622