Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14526111_14527869_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14526111 - 14527869

Intron Length:

1759

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAGA

5'SS Class:

strong_major

3'SS Sequence:

CTGGACCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCAAT

U12 Branch Point Sequence:

AGTCTCTTATCT

Flanking Amino Acid:

KQFSHPSNWAGFMLIGSDMK

Intron Amino Acid Position:

1656

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

71.7

40.1

Major BPS

76.9

0.67

1.2

31.9

Major PPT

67.2

0.39

58.7

Minor 5ss

31.4

-2.1

3.1

40.2

45.5

Minor BPS

61.9

0.45

1.6

76.55

39.6

Associated Gene:

Gene:

TTC28

Ensembl Gene ID:

ENSAPLG00000009407

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043953

14516005 - 14661973

145969

ENSAPLT00000030822

14516005 - 14661922

145918

ENSAPLT00000009814

14516352 - 14661973

145622