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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14529859_14532714_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14529859 - 14532714
Intron Length:
2856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGCTTC
5'SS Class:
major
3'SS Sequence:
CTTTACTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
ATCTCTTTACTT
Flanking Amino Acid:
YDLLIGPLEGGLMHSSGPVG
Intron Amino Acid Position:
1356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
66.9
40
Major BPS
74
0.6
1
65.6
41.1
Major PPT
86.2
0.81
0.8
80
31.7
Minor 5ss
49.7
-0
2.7
64.5
41.1
Minor BPS
64.5
0.53
1.6
77.48
40

Associated Gene:

Gene:
TTC28
Ensembl Gene ID:
ENSAPLG00000009407
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043953
14516005 - 14661973
145969
ENSAPLT00000030822
14516005 - 14661922
145918
ENSAPLT00000009814
14516352 - 14661973
145622