About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14532860_14539714_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14532860 - 14539714
Intron Length:
6855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
ATTTCTGCAACT
Flanking Amino Acid:
RMVSRNNLLNRSCQSMTSLF
Intron Amino Acid Position:
1307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
78.7
0.64
0.8
72.6
32.3
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
56.9
0.3
2.2
82.49
39

Associated Gene:

Gene:
TTC28
Ensembl Gene ID:
ENSAPLG00000009407
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043953
14516005 - 14661973
145969
ENSAPLT00000030822
14516005 - 14661922
145918
ENSAPLT00000009814
14516352 - 14661973
145622