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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14539856_14544039_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14539856 - 14544039
Intron Length:
4184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
GTTCCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATTAT
U12 Branch Point Sequence:
ATTCCTTCAACC
Flanking Amino Acid:
EALGVDSYYTRACASSETES
Intron Amino Acid Position:
1260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61
46.2
Major BPS
64.6
0.36
1.1
55.7
39.9
Major PPT
80
0.68
0.8
73.6
31.4
Minor 5ss
43.7
-0.7
2.9
56.4
47.8
Minor BPS
66
0.48
1.5
74.84
35.2

Associated Gene:

Gene:
TTC28
Ensembl Gene ID:
ENSAPLG00000009407
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043953
14516005 - 14661973
145969
ENSAPLT00000030822
14516005 - 14661922
145918
ENSAPLT00000009814
14516352 - 14661973
145622