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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14544206_14546191_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14544206 - 14546191
Intron Length:
1986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AATGTCATGATT
Flanking Amino Acid:
LYSWLLAPGAGILKFHEYYL
Intron Amino Acid Position:
1205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
33
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
32.6
-2
3.2
41.8
45.1
Minor BPS
48.9
-0
1.7
66.32
38.5

Associated Gene:

Gene:
TTC28
Ensembl Gene ID:
ENSAPLG00000009407
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043953
14516005 - 14661973
145969
ENSAPLT00000030822
14516005 - 14661922
145918
ENSAPLT00000009814
14516352 - 14661973
145622