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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14546411_14546823_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14546411 - 14546823
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGACAT
U12 Branch Point Sequence:
AGGTCTGAGACA
Flanking Amino Acid:
QALQRVLVSLGHHDEALAVA
Intron Amino Acid Position:
1132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
46.8
-0.2
1.3
52.7
43.2
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
42.8
-0.5
2.2
52.39
40.1

Associated Gene:

Gene:
TTC28
Ensembl Gene ID:
ENSAPLG00000009407
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043953
14516005 - 14661973
145969
ENSAPLT00000030822
14516005 - 14661922
145918
ENSAPLT00000009814
14516352 - 14661973
145622