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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14661775_14661861_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14661775 - 14661861
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGATTTTC
5'SS Class:
major
3'SS Sequence:
AACCGCTCAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTTACAGTAACC
Flanking Amino Acid:
VRQSNQACHDAYMKIQQYDK
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
72.9
32.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
58.7
0.2
1
51.8
37
Minor 5ss
39.5
-1.2
2.9
49.5
41.3
Minor BPS
55
0.14
2.3
76.58
39.2

Associated Gene:

Gene:
TTC28
Ensembl Gene ID:
ENSAPLG00000009407
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030822
14516005 - 14661922
145918