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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14669601_14670348_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14669601 - 14670348
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAAAAA
5'SS Class:
major
3'SS Sequence:
TTATTTATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTCTTGAAAA
Flanking Amino Acid:
AVASTSFQKMRMD*
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
75.4
28.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.8
0.65
0.8
78.5
34.4
Minor 5ss
26.7
-2.7
2.8
30.6
42.8
Minor BPS
65
0.47
1.5
74.65
36.2

Associated Gene:

Gene:
CHEK2
Ensembl Gene ID:
ENSAPLG00000009586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010044
14669233 - 14689500
20268