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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14671143_14675542_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14671143 - 14675542
Intron Length:
4400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TACTGCTTATTT
Flanking Amino Acid:
EEALDHPWLQDENMKNTFQQ
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
91.5
0.93
0.6
88.6
20.8
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
53.8
0.2
2
72.6
44.8

Associated Gene:

Gene:
CHEK2
Ensembl Gene ID:
ENSAPLG00000009586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010044
14669233 - 14689500
20268