About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14675129_14675542_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14675129 - 14675542
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTATAC
U12 Branch Point Sequence:
GCTGACTATACT
Flanking Amino Acid:
EEALDHPWLQAVLRPEGFCC
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
49.2
-0
1
46.7
36.1
Major PPT
79.6
0.67
0.9
73.5
36.4
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
43.9
-0.4
2.2
61.52
47.8

Associated Gene:

Gene:
CHEK2
Ensembl Gene ID:
ENSAPLG00000009586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034169
14673472 - 14687887
14416