Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14675629_14677052_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14675629 - 14677052

Intron Length:

1424

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATGACTC

5'SS Class:

major

3'SS Sequence:

TTTTTCATCTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTTTCATCT

Flanking Amino Acid:

SKEWKHVSGMALDLVKKLLV

Intron Amino Acid Position:

436

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.54

1.1

62.5

42.3

Major BPS

100

1.24

0.5

100

Major PPT

82.9

0.74

0.7

82.5

27.7

Minor 5ss

42.2

-0.9

3.1

51.7

45.1

Minor BPS

61.1

0.43

1.8

83.46

37.9

Associated Gene:

Gene:

CHEK2

Ensembl Gene ID:

ENSAPLG00000009586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034169

14673472 - 14687887

14416

ENSAPLT00000010044

14669233 - 14689500

20268