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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14677560_14678587_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14677560 - 14678587
Intron Length:
1028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTAAATACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAATA
Flanking Amino Acid:
SSSEETCLIKITDFGQSKIL
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
57
0.16
1.2
55.2
42.6
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
66.3
0.51
1.6
75.34
36.5

Associated Gene:

Gene:
CHEK2
Ensembl Gene ID:
ENSAPLG00000009586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034169
14673472 - 14687887
14416
ENSAPLT00000010044
14669233 - 14689500
20268