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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14678675_14680074_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14678675 - 14680074
Intron Length:
1400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAAT
5'SS Class:
major
3'SS Sequence:
TTCCTATATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCCTATATC
Flanking Amino Acid:
YFYQMLLAVKYLHDNGIIHR
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.5
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.6
0.53
0.9
66.7
38.7
Minor 5ss
35.7
-1.6
3.1
50.7
45.8
Minor BPS
56.3
0.18
2
70.08
42

Associated Gene:

Gene:
CHEK2
Ensembl Gene ID:
ENSAPLG00000009586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034169
14673472 - 14687887
14416
ENSAPLT00000010044
14669233 - 14689500
20268