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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14680743_14681505_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14680743 - 14681505
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTATTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTCTAC
U12 Branch Point Sequence:
TGTTTTTTATTA
Flanking Amino Acid:
EIEILKKIDHPCLIKIKNFF
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
48.5
-0
1.4
50.2
44.9
Major PPT
81.1
0.7
0.9
82.3
34.1
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
62
0.37
1.5
71.06
35.7

Associated Gene:

Gene:
CHEK2
Ensembl Gene ID:
ENSAPLG00000009586
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034169
14673472 - 14687887
14416
ENSAPLT00000010044
14669233 - 14689500
20268