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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14689748_14689816_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14689748 - 14689816
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCGCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CGGGCCTCACGC
Flanking Amino Acid:
PRPDLFRLMDCDRSFSLDVQ
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
68.6
0.42
0.9
61.8
34.9
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
39.7
-0.8
2
42.46
44.7

Associated Gene:

Gene:
HSCB
Ensembl Gene ID:
ENSAPLG00000010206
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010631
14689521 - 14694089
4569