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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14689914_14690396_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14689914 - 14690396
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTTGTTAATA
Flanking Amino Acid:
HPDRFGQRPPKEQHYSEQHS
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.2
0.72
0.8
76.1
32.4
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
58.8
0.27
2
70.3
36.1

Associated Gene:

Gene:
HSCB
Ensembl Gene ID:
ENSAPLG00000010206
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010631
14689521 - 14694089
4569