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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14690487_14691028_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14690487 - 14691028
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGGAGT
5'SS Class:
major
3'SS Sequence:
TTTTCTCCACCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAATT
Flanking Amino Acid:
LNPLSRGLYLLELNGVEPAQ
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
68.9
41.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.2
0.7
0.8
75.3
34.5
Minor 5ss
35.8
-1.6
3.3
50.3
41.4
Minor BPS
69
0.67
1.6
83.97
37.3

Associated Gene:

Gene:
HSCB
Ensembl Gene ID:
ENSAPLG00000010206
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010631
14689521 - 14694089
4569