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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14692079_14693334_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14692079 - 14693334
Intron Length:
1256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTATT
5'SS Class:
major
3'SS Sequence:
TATTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTCATT
Flanking Amino Acid:
TKEVTAAFERDDLQEAKKLL
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.2
81.8
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.1
0.79
0.8
82.5
33.5
Minor 5ss
45.8
-0.4
3
68.3
42.6
Minor BPS
61.3
0.44
1.9
84.41
36.8

Associated Gene:

Gene:
HSCB
Ensembl Gene ID:
ENSAPLG00000010206
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010631
14689521 - 14694089
4569