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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14696045_14696594_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14696045 - 14696594
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCACAC
5'SS Class:
major
3'SS Sequence:
TCATTACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
GTTTCCGAAACT
Flanking Amino Acid:
AFILSFGLGPGGITNTLTAE
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.2
58.7
40.6
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
71.8
0.49
0.9
62.9
38.4
Minor 5ss
43.9
-0.7
2.9
59.4
45.3
Minor BPS
59
0.36
2.3
84.57
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010334
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010777
14694773 - 14702058
7286