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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14696671_14697569_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14696671 - 14697569
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTAAAGA
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
ATTATCAAAACT
Flanking Amino Acid:
IVLTFSLTYQELYSWVPYVS
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1
62.8
37.1
Major BPS
79
0.72
1
80.3
31.7
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
32.8
-2
2.9
40.2
45.5
Minor BPS
50.9
0.11
2
75.82
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010334
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010777
14694773 - 14702058
7286