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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14698932_14700146_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14698932 - 14700146
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ACACCTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAC
U12 Branch Point Sequence:
TTTTCCACACCT
Flanking Amino Acid:
GILTGQIIGLRELLGGEMYW
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
85.7
30.3
Major BPS
67
0.42
1.1
58
38.5
Major PPT
72.1
0.5
0.9
62
39
Minor 5ss
35.8
-1.6
3
49.8
46.1
Minor BPS
57
0.3
2.1
85.52
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010334
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010777
14694773 - 14702058
7286