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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14700277_14700788_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14700277 - 14700788
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
CATTTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATCTATTAATA
Flanking Amino Acid:
VGRFLIGINSGIGICVQPLY
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.7
0.69
0.9
74.1
35.2
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
57.2
0.22
1.5
65.62
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010334
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010777
14694773 - 14702058
7286