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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14700914_14701897_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14700914 - 14701897
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TATTGCTGATTT
Flanking Amino Acid:
IGGSMAIRLGRKGALLMNNI
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
91
0.92
0.6
89.3
19.4
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
49.5
0.04
2.1
74.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010334
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010777
14694773 - 14702058
7286