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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14705657_14706377_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14705657 - 14706377
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTCTATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAGAAT
U12 Branch Point Sequence:
TTCTCTCTATTT
Flanking Amino Acid:
RGLHQQQSHSHVTVRGGKKH
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
54.1
0.1
1.4
64.1
39.8
Major PPT
84.9
0.79
0.8
79.1
32.6
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
53.7
0.2
1.9
75.99
41.5

Associated Gene:

Gene:
CCDC117
Ensembl Gene ID:
ENSAPLG00000010617
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011054
14704786 - 14709368
4583