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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14706429_14706803_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14706429 - 14706803
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATTAA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTTTTGTCAATT
Flanking Amino Acid:
KKHKLEEEAEGCPVKKKRLT
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.5
33.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.2
0.75
0.8
77.1
37.1
Minor 5ss
38.4
-1.3
2.9
40.2
46
Minor BPS
50.6
0.1
2.2
75.15
42.4

Associated Gene:

Gene:
CCDC117
Ensembl Gene ID:
ENSAPLG00000010617
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011054
14704786 - 14709368
4583