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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14707038_14708456_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14707038 - 14708456
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCATTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TAGTGTTTATTT
Flanking Amino Acid:
ARRKLQEIEDRIIDEDEEVH
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
69.7
0.44
0.8
61.5
33.8
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
49.4
0.03
2
68.28
43.5

Associated Gene:

Gene:
CCDC117
Ensembl Gene ID:
ENSAPLG00000010617
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011054
14704786 - 14709368
4583