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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14708595_14709115_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14708595 - 14709115
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCATCCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGTAATTTAACT
Flanking Amino Acid:
EVLTKKIIESMSRPSMELVL
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
71
0.47
0.8
62.1
34.5
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
68.2
0.65
1.5
82.79
37.8

Associated Gene:

Gene:
CCDC117
Ensembl Gene ID:
ENSAPLG00000010617
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011054
14704786 - 14709368
4583