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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14717390_14718155_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14717390 - 14718155
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCTAAACC
Flanking Amino Acid:
ILMAVTLQILSLISCWAFWT
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.9
0.9
0.7
85.2
29.1
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
69.5
0.59
1.6
77.35
39.1

Associated Gene:

Gene:
XBP1
Ensembl Gene ID:
ENSAPLG00000023946
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045698
14716027 - 14719657
3631