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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14718320_14718920_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14718320 - 14718920
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TATGTGATGACT
Flanking Amino Acid:
LKTEKESEPKVVMESQVDEI
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.9
35.3
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
79.1
0.66
1
72.5
42.4
Minor 5ss
33.5
-1.9
3.4
47.6
48
Minor BPS
44.7
-0.3
2.3
68.22
42.8

Associated Gene:

Gene:
XBP1
Ensembl Gene ID:
ENSAPLG00000023946
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045698
14716027 - 14719657
3631