Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14719050_14719129_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14719050 - 14719129

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

CGGCTCTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCGAC

U12 Branch Point Sequence:

CCTGCTGCGACC

Flanking Amino Acid:

EQQVVELEEENQKLLLENQL

Intron Amino Acid Position:

154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

44.6

-0.3

1.3

39.2

40.8

Major PPT

72.4

0.5

0.9

65.4

36.1

Minor 5ss

32.6

-2

3.1

44.2

Minor BPS

40.8

-0.7

2.2

48.7

42.5

Associated Gene:

Gene:

XBP1

Ensembl Gene ID:

ENSAPLG00000023946

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045698

14716027 - 14719657

3631