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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14719227_14719295_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14719227 - 14719295
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CGCTGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGGTGCTGACGG
Flanking Amino Acid:
HLSPEEKALRRKLKNRVAAQ
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
65.4
0.35
0.9
57.7
33.3
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
39.5
-0.9
2.3
44.43
47.2

Associated Gene:

Gene:
XBP1
Ensembl Gene ID:
ENSAPLG00000023946
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045698
14716027 - 14719657
3631