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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14793196_14815955_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14793196 - 14815955
Intron Length:
22760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAGGAT
U12 Branch Point Sequence:
TGAGTCTGAGGA
Flanking Amino Acid:
PKPCLTVLGKAKRAVQRGAT
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
47.8
-0.1
1.5
45.5
47.5
Major PPT
91
0.92
0.6
87.8
22.1
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
41.8
-0.6
1.9
49.35
41.3

Associated Gene:

Gene:
ZNRF3
Ensembl Gene ID:
ENSAPLG00000010783
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040075
14738159 - 14829504
91346
ENSAPLT00000019055
14738159 - 14828790
90632
ENSAPLT00000011229
14738159 - 14828790
90632