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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14816031_14820171_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14816031 - 14820171
Intron Length:
4141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTTGTTATCG
Flanking Amino Acid:
VSENPDAIDQLNQGLEDPLK
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72.1
0.5
1
69.2
41.8
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
53.7
-0
2.3
70.48
43.1

Associated Gene:

Gene:
ZNRF3
Ensembl Gene ID:
ENSAPLG00000010783
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040075
14738159 - 14829504
91346
ENSAPLT00000019055
14738159 - 14828790
90632
ENSAPLT00000011229
14738159 - 14828790
90632