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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14820304_14821134_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14820304 - 14821134
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGATTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTTCTGATTT
Flanking Amino Acid:
RARIQHRPPRQPTEYFDMGI
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.8
38.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
71.9
0.49
1.1
75.2
38.5
Minor 5ss
34.3
-1.8
3.1
42
44.5
Minor BPS
57.2
0.3
1.7
76.09
41.1

Associated Gene:

Gene:
ZNRF3
Ensembl Gene ID:
ENSAPLG00000010783
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019055
14738159 - 14828790
90632
ENSAPLT00000011229
14738159 - 14828790
90632
ENSAPLT00000040075
14738159 - 14829504
91346