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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14825654_14826955_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14825654 - 14826955
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGACATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TACTTCTCCACT
Flanking Amino Acid:
TCPHCRHNIIEQKKGNTGPV
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74.1
0.54
1
70.8
39.2
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
51.8
0.14
2
72.77
44.1

Associated Gene:

Gene:
ZNRF3
Ensembl Gene ID:
ENSAPLG00000010783
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019055
14738159 - 14828790
90632
ENSAPLT00000011229
14738159 - 14828790
90632
ENSAPLT00000040075
14738159 - 14829504
91346