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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14828702_14829460_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14828702 - 14829460
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCGT
5'SS Class:
major
3'SS Sequence:
CTTTATCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAGTTTTAACT
Flanking Amino Acid:
QKLTVTTKTTGAGSHPMERS
Intron Amino Acid Position:
834

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
65.5
45.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.3
0.68
0.7
78.2
30.3
Minor 5ss
39.7
-1.2
3.1
57.3
46.7
Minor BPS
72.5
0.78
1.3
83.9
37.2

Associated Gene:

Gene:
ZNRF3
Ensembl Gene ID:
ENSAPLG00000010783
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040075
14738159 - 14829504
91346