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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14843352_14843959_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14843352 - 14843959
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
GTTTGTATAATC
Flanking Amino Acid:
QAQGFAIRYKAVKDSVHQNK
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
87.1
0.84
0.8
84.6
36
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
51
0.01
2
67.68
38.3

Associated Gene:

Gene:
KREMEN1
Ensembl Gene ID:
ENSAPLG00000010833
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031442
14842182 - 14866317
24136
ENSAPLT00000030342
14842182 - 14867876
25695
ENSAPLT00000011275
14842182 - 14866904
24723