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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14848001_14854174_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14848001 - 14854174
Intron Length:
6174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTGCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTGTCTGTTATT
Flanking Amino Acid:
WKYCEIPSCRMPGNLGCYKD
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
74.1
29.5
Major BPS
70
0.5
1
67
39.8
Major PPT
81.5
0.71
1
77.1
41.8
Minor 5ss
31.5
-2.1
3.4
38.4
40.9
Minor BPS
49.3
0.03
2.3
74.98
42.6

Associated Gene:

Gene:
KREMEN1
Ensembl Gene ID:
ENSAPLG00000010833
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031442
14842182 - 14866317
24136
ENSAPLT00000030342
14842182 - 14867876
25695
ENSAPLT00000011275
14842182 - 14866904
24723