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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14854267_14856894_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14854267 - 14856894
Intron Length:
2628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTTCACTCACT
Flanking Amino Acid:
EGGLGEHNYCRNPDGDVSPW
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
87.9
0.85
0.7
81
31
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
54.8
0.23
2.3
86.18
39.4

Associated Gene:

Gene:
KREMEN1
Ensembl Gene ID:
ENSAPLG00000010833
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011275
14842182 - 14866904
24723
ENSAPLT00000031442
14842182 - 14866317
24136
ENSAPLT00000030342
14842182 - 14867876
25695