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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14857058_14865726_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14857058 - 14865726
Intron Length:
8669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCTT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCTTTTTCCATT
Flanking Amino Acid:
MLHREECYTANGADY
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.6
41.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.9
0.69
0.8
72.9
37
Minor 5ss
43.9
-0.7
3.2
65.5
45.6
Minor BPS
48.8
-0
1.9
70.72
41.5

Associated Gene:

Gene:
KREMEN1
Ensembl Gene ID:
ENSAPLG00000010833
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031442
14842182 - 14866317
24136