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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14857058_14866825_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14857058 - 14866825
Intron Length:
9768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCTTTTTCCATT
Flanking Amino Acid:
LSCCREPVLSECYTANGADY
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.2
33
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.9
0.69
0.8
72.9
37
Minor 5ss
28
-2.5
3.1
35.2
41.4
Minor BPS
48.8
-0
1.9
70.72
41.5

Associated Gene:

Gene:
KREMEN1
Ensembl Gene ID:
ENSAPLG00000010833
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011275
14842182 - 14866904
24723