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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14871021_14872760_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14871021 - 14872760
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
ARLTFLCRKERHEGNKKLVS
Intron Amino Acid Position:
806

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.5
0.57
1
75.2
33.5
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
SUSD2
Ensembl Gene ID:
ENSAPLG00000010889
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011344
14870879 - 14894753
23875