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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_14878476_14878878_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14878476 - 14878878
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGACAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTACTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTTTTTTTACT
Flanking Amino Acid:
HKQLVENLKPVISCGWLDHP
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
58.6
42.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
85.9
0.81
0.8
82.3
34.1
Minor 5ss
25.4
-2.8
2.8
22.1
37
Minor BPS
74
0.84
1.5
91.27
31.8

Associated Gene:

Gene:
SUSD2
Ensembl Gene ID:
ENSAPLG00000010889
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011344
14870879 - 14894753
23875